Welcome to CSSB Laboratory Webpage
We develop computational and statistical solutions for the analysis of high-dimensional molecular data in various contexts of biomedical research. Our research topics include
Network inference and interpretable integration of multi-omics data in biological experiments and clinical studies
Harmonizing information between bulk omics data and single cell-level omics data
Mapping molecular changes between tissues and circulation in biomarker discovery for cardiovascular diseases
Application of sequencing and mass spectrometry-based omics technologies in clinical and food science research
Development of novel informatics tools for large-scale untargeted and targeted mass spectrometry (MS) data processing in metabolomics and lipidomics
To see examples of our work, check out the CSSB LAB GitHub page!
Latest News
1 May 2024: We will be uploading more powerful versions of our targeted MRM processing software MRMkit and untargeted MS-based metabolomics/lipidomics data processing suite MetaboKit. New companion software for targeted PRM data processing [GitHub link], scanning SWATH metabolomics processing [GitHub link], and data processing software for flow injection analysis or similar direct infusion analysis [GitHub link] will be released later this year. All with public license, stay tuned or contact us for potential collaboration!
4 May 2024: Codes were cleaned for efficient protein-level scoring and faster computation in EBprotV2.
15 March 2023: Check out our new iOmicsPASS+ software for network-based multi-omic integration and classification.
HC is an associate editor at Molecular Omics -- feel free to discuss submission of your manuscript. We are looking for reviews and research articles in novel multi-omics integration approaches.