Selected Research Papers by the CSSB lab in the past 5 years
Q. Zhao, W. De Nardo, [...], H. Choi*, M.J. Watt*, P. Kaldis*. Global molecular landscape of early MASLD progression in obesity. eLife 2025 14.
Q. Zhao, Y.Y. Pang, R.L. Lim, W.K. Tham, H. Choi. Metabolomics in cardiovascular diseases: from prevention strategies to domain-specific application. Expert Review of Proteomics 2025; 22(11-12): 471-489.
S. Lee, J. Bang, Y. Kim, H. Choi, S.Y Oh, J.H. Won. Learning massive-scale partial correlation networks in clinical multi-omics studies with HP-ACCORD. Annals of Applied Statistics 2025; 19(4): 2759-2781.
H. Koh, A. Pilbrow, S. Tan, Q. Zhao, P. Benke, B. Burla, F. Torta, J. Pickering, R. Troughton, C. Pemberton, W. Soo, L.H. Ling, R. Doughty, H. Choi, M. Wenk, A.M. Richards, M. Chan. An integrated signature of extracellular matrix proteins and a diastolic function imaging parameter predicts post-MI long-term outcomes. Frontiers in Cardiovascular Medicine 2023. Paper featuring the upgraded iOmicsPASSplus software.
S. Ko, G.X.L. Li, H. Choi*, J. Won*. Computationally scalable regression modeling for ultrahigh-dimensional omics data with ParProx. Brief. Bioinfo. 2021; 22(6):bbab256.
S. Ghosh, A. Datta, H. Choi. multiSLIDE is a web server for exploring connected elements of biological pathways in multi-omics data. Nat. Comms 2021; 12(1): 1-11.
Selected Papers from collaboration
W.K. Tham et al., Ultrafast measurement of circulating ceramides in human cohorts. Analytical Chemistry 2025.
S. Cho et al., Cross-covariance matrix estimation for directional integration of dual-omics data. J. Statist. Comput. Sim. 2025, 95(8), 1763-1787.
J. Chang et al., Q-RAI data-independent acquisition for lipidomic quantitative profiling. Sci. Rep. 2023; 13(1): 19281.
T. Tumkaya et al., Most primary olfactory neurons have individually neutral effects on behavior. Elife 2022; 11:e71238.
S. Tan et al., Variability of the plasma lipidome and subclinical coronary atherosclerosis. Arterioscler. Thromb. Vasc. Biol. 2022; 42(1):100-112.
A. Targa el al., Non-genetic and genetic rewiring underlie adaptation to hypomorphic alleles of an essential gene. EMBO J. 2021;40(21):e107839.